PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_22509_f_1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARF
Protein Properties Length: 352aa    MW: 39619.4 Da    PI: 7.8293
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_22509_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-10101161156
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEET CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkks 56 
                     f+k+lt sd++++g +++p++ ae+        ++++ + ++l+++d++ ++W++++iyr+ +
  Neem_22509_f_1 101 FCKTLTASDTSTHGGFSVPRRAAEKLfppldytMQPP-T-QELVVRDLHDNTWTFRHIYRGEG 161
                     99*********************999*****954444.4.38****************97654 PP

2Auxin_resp119.72.3e-39210293183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaas++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  Neem_22509_f_1 210 AAHAASNRSPFTIFYNPRACPSEFVIPLAKYRKSVYgTQISVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQ 293
                     79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-3188213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-2094161IPR015300DNA-binding pseudobarrel domain
CDDcd100179.29E-10100163No hitNo description
SMARTSM010190.0038101191IPR003340B3 DNA binding domain
PfamPF023623.4E-8101161IPR003340B3 DNA binding domain
PfamPF065073.2E-34210293IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MVQPGAIRSV AFILTYDFMY YVRFFDQVAV STKRSATSQI PNYPNLPSQL MCQVHNVTLH  60
ADKDTDEIYA QMSLQPVSCE KDVFPIPDFG LKPSKHPSEF FCKTLTASDT STHGGFSVPR  120
RAAEKLFPPL DYTMQPPTQE LVVRDLHDNT WTFRHIYRGE GSQRDTFSPQ VGVCLLAQKG  180
LELVILFCLL ALPSSVLSAD SMHIGVLAAA AHAASNRSPF TIFYNPRACP SEFVIPLAKY  240
RKSVYGTQIS VGMRFGMMFE TEESGKRRYM GTIVGISDLD PLRWPGSKWR NLQVEWDEPG  300
CSDKQKRVSS WEIETPESLF IFPSLTSGLK RPFHSGFLGE FSFVLVSTKH AF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1652631882392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7394011e-50KF739401.1 Dimocarpus longan cultivar Honghezi auxin response factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006435146.10.0hypothetical protein CICLE_v10000183mg
SwissprotP930241e-173ARFE_ARATH; Auxin response factor 5
TrEMBLV9QKS50.0V9QKS5_9R
STRINGPOPTR_0005s25800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.11e-173ARF family protein